PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40136
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 240aa    MW: 26922.2 Da    PI: 8.8331
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40136genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001884106123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++C + F ++  L  H++ H
  Tp57577_TGAC_v2_mRNA40136  84 FSCNYCQRKFYSSQALGGHQNAH 106
                                89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.35E-681111No hitNo description
PROSITE profilePS5015711.42784111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MNHLNPKSYP SENLNFPYLE TSMDTKHKNE SSPQLVLDLS LSSKDSCDDE SKQELNLLNC  60
FHANLSESSS ESSLDPNELD PRVFSCNYCQ RKFYSSQALG GHQNAHKRER TLARRGYTTS  120
MPSSMSSYGL CNKSLGIQVH SMINKPCYQK PFFGFCSNGQ NGWKRQNFDS QPAIRKLPSG  180
NFHVRNETEP SFGSSISKVA MFPKGLVNEG FGSYLLDKST SHLKSKQEKL KNLDLSLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003604205.21e-122zinc finger-like protein
RefseqXP_013454510.11e-122zinc finger-like protein
TrEMBLG7JD881e-122G7JD88_MEDTR; Uncharacterized protein
STRINGGLYMA08G23210.14e-78(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.13e-32C2H2 family protein